STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcnAHydrogen cyanide synthase HcnA; Identified by sequence similarity; putative; ORF located using Blastx/COG0446. (61 aa)    
Predicted Functional Partners:
hcnC
Hydrogen cyanide synthase HcnC; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0665.
    
 0.992
hcnB
Hydrogen cyanide synthase HcnB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0446.
    
 0.979
nuoF
NADH-ubiquinone oxidoreductase, chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 
 0.965
nuoE
NADH-ubiquinone oxidoreductase, chain E; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1905.
  
 
 0.963
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.917
CV_1572
Probable ferredoxin protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3411.
  
 
 0.909
CV_2501
Probable ferredoxin 2fe-2s protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3411.
  
 
 0.909
fdoH
Formate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0437/TC:5.A.3.2.1.
  
  
 0.883
fdoI
Formate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2864/TC:5.A.3.2.1.
  
  
 0.881
rnfE
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 
 0.823
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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