Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1765Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (114 aa)    
Predicted Functional Partners:
CV_1764
Probable propionyl-CoA carboxylase (beta subunit); Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0825/TC:3.B.1.1.2.
       0.752
CV_1763
Probable enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1024.
       0.746
CV_1762
Probable acyl-coA carboxylase subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0439/TC:3.B.1.1.2.
       0.725
CV_1761
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0457.
       0.624
mvaB
hydroxymethylglutaryl-CoA lyase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0119/TC:3.B.1.1.1.
       0.620
CV_1760
Probable transcriptional regulator (AraC/XylS family); Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.620
CV_1766
Probable isovaleryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
       0.486
CV_2811
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.472
CV_2462
Hypothetical protein.
  
     0.437
CV_1767
Probable MutT/nudix family protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0494.
 
     0.431
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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