STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkAProtein kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2766. (642 aa)    
Predicted Functional Partners:
CV_1790
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2718; Belongs to the UPF0229 family.
  
 0.997
CV_1791
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2719.
 
  
 0.990
elaB
Transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx.
   
    0.854
CV_0701
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx.
   
    0.800
dps
DNA-binding stress protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0783; Belongs to the Dps family.
   
    0.781
katE
Catalase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0753; Belongs to the catalase family.
   
  
 0.711
CV_3236
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0693.
   
  
 0.684
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655; Belongs to the WrbA family.
   
    0.679
CV_2794
Probable trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655.
   
    0.679
CV_2816
Probable PhoH-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1875.
   
  
 0.593
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.