STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnNATP-binding component of phosphonate transport; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP). (185 aa)    
Predicted Functional Partners:
CV_1848
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
     0.993
phnM
Phosphonate metabolism protein PhnM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3454.
  
 0.978
phnF
Transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
 
  
 0.971
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
  
 0.966
phnG
Phosphonate metabolism protein PhnG; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3624.
 
  
 0.965
phnH
Phosphonate metabolism protein PhnH; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3625.
 
  
 0.960
phnI
Phosphonate metabolism protein PhnI; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3626.
 
  
 0.958
phnL
Phosphonates transport ATP-binding protein phnL; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136.
 
  
 0.956
phnK
Phosphonates transport ATP-binding protein phnK; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1101/TC:3.A.1.5.1.
 
  
 0.956
CV_0033
Probable ribose-phosphate diphosphokinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0462.
     
  0.900
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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