Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiAEndochitinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (439 aa)    
Predicted Functional Partners:
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.879
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
 
 
 
 0.878
CV_2935
Probable chitinase A; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.794
CV_2894
Probable endoglucanase-related protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.771
CV_0554
Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3397.
 
  
 0.760
CV_0553
Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397.
 
  
 0.750
cbpD1
Carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3397.
 
  
 0.749
cpbD
Carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397.
 
  
 0.747
CV_0096
Hypothetical protein.
 
     0.631
lolA
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
      
 0.575
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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