Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1905Probable transcription regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0693. (304 aa)    
Predicted Functional Partners:
CV_1902
Probable hydrolase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1335.
    0.943
CV_1904
Probable transmembrane protein, DMT Superfamily; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.2.
 
     0.845
CV_1903
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.773
CV_2101
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0693.
  
     0.681
CV_1906
Hypothetical protein.
       0.636
CV_1907
Hypothetical protein.
       0.636
CV_1826
Probable FAD-dependent monooxygenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0654.
  
     0.427
fbpA
ABC transporter, iron binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.10.2.
       0.418
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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