close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbpAABC transporter, iron binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.10.2. (330 aa)    
Predicted Functional Partners:
fbpB
ABC transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1178/TC:3.A.1.10.2.
 
 
 0.996
CV_1910
Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130; Belongs to the ABC transporter superfamily.
 
 
 0.987
CV_1857
Probable ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1178/TC:3.A.1.10.2.
 
 
 0.932
CV_1396
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1840.
  
  
  0.919
CV_1855
Probable iron uptake ABC transporter periplasmic solute-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840.
  
  
0.918
cysA2
Probable ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
 0.899
CV_0796
Probable periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3470.
   
  
 0.879
CV_0794
Probable high-affinity iron permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0672/TC:9.A.10.1.1.
   
  
 0.835
CV_1964
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0748.
   
    0.820
trxB
Thioredoxin reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0492.
   
  
 0.743
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.