STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbpAABC transporter, iron binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.10.2. (330 aa)    
Predicted Functional Partners:
fbpB
ABC transport system, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1178/TC:3.A.1.10.2.
 
 
 0.995
CV_1910
Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130; Belongs to the ABC transporter superfamily.
 
 
 0.987
CV_1855
Probable iron uptake ABC transporter periplasmic solute-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1840.
  
  
0.924
CV_1396
Probable ABC transporter, periplasmic substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1840.
  
  
  0.919
CV_1857
Probable ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1178/TC:3.A.1.10.2.
 
 
 0.919
cysA2
Probable ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
 0.879
CV_0796
Probable periplasmic protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3470.
   
  
 0.857
CV_0103
Probable two-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2972.
   
   0.702
motB1
Chemotaxis motB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.2.
    
   0.655
agaY
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
      
 0.616
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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