Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_1922Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1802. (224 aa)    
Predicted Functional Partners:
CV_1029
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1802.
  
     0.767
CV_1923
Probable transposase; Identified by sequence similarity; putative; ORF located using Blastx/COG2801.
       0.701
ilvH
Acetolactate synthase isozyme III, small subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0440.
  
    0.694
CV_3730
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2186.
 
  
 0.662
CV_3919
Probable transcriptional regulator, AsnC family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1414.
  
  
 0.525
CV_1924
Hypothetical protein.
       0.492
hutC
Histidine utilization repressor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
   
 0.424
prmB
Probable adenine-specific methylase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
   
   0.421
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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