STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
tagDNA-3-methyladenine glycosylase I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2818. (189 aa)    
Predicted Functional Partners:
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
      0.858
fliW
Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
       0.773
CV_0530
Probable NADPH:quinone oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0431.
      0.706
CV_2565
Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1028; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      0.638
mutY
A/G-specific DNA glycosylase; Adenine glycosylase active on G-A mispairs.
    
 0.537
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.517
ADA
methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0350.
 
   
 0.468
czcR
Two-component response regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
       0.452
CV_1948
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0745.
       0.412
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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