Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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CV_1971Conserved hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (216 aa)    
Predicted Functional Partners:
exbB1
Biopolymer transport protein; Identified by sequence similarity; putative.
 
 
 0.958
exbD3
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848.
 
 
 0.945
exbD5
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative;/COG0848/TC:2.C.1.1.1.
 
 
 0.942
exbB2
Biopolymer transport protein; Identified by sequence similarity; putative.
 
 
 0.888
exbD4
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848.
 
 
 0.860
CV_3188
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.2.
 
 
 0.858
fepA
Enterobactin-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.7.1.
 
 
 0.856
exbD1
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848.
 
 
 0.846
CV_1970
Probable TonB-dependent receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.1.6.
 
 
 0.837
CV_0494
Probable outer membrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.3.1.
 
 
 
 0.771
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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