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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1981Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1123/TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. (569 aa)    
Predicted Functional Partners:
CV_1980
Probable ABC trasporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2.
 
 0.997
CV_2686
Probable ABC trasporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2.
 
 0.997
CV_1979
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.3.
 
 0.994
CV_2687
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.2.
 
 0.984
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.1.
  
 0.975
dppC
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.5.
  
 0.969
CV_3936
Probable binding protein component of ABC dipeptide transporter; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0747/TC:3.A.1.5.5.
 
 
  0.905
hbpA
Heme-binding protein A precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1.
 
    0.904
CV_2685
Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1123/TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
  
  
 
0.900
oppB
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.1.
  
 0.796
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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