STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1990Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0542. (104 aa)    
Predicted Functional Partners:
CV_2093
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
  
     0.733
CV_4276
Probable glutamate-cysteine ligase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.730
CV_3788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.726
sdhD
Succinate dehydrogenase, hydrophobic subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2142.
  
     0.723
CV_4387
Probable cytochrome c-type biogenesis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1333.
  
     0.689
CV_0955
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.658
CV_0626
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3308.
  
     0.631
hemY
Protein porphyrin biosynthesis; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3071.
  
     0.626
CV_2500
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2945.
 
     0.600
CV_4235
Probable (S)-2-hydroxy-acid oxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247.
  
     0.568
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.