Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_1996Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (67 aa)    
Predicted Functional Partners:
CV_1995
Probable membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.2.
       0.727
CV_1169
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3198.
  
     0.613
fixS
Nitrogen fixation protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3197.
  
     0.609
CV_1589
Probable integral membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3235.
  
     0.585
CV_3398
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1241.
  
     0.585
argG
Argininosuccinate synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0137; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.581
CV_0582
Hypothetical protein.
  
     0.572
argI
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.489
CV_1171
Probable cytochrome-c oxidase, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
     0.431
CV_2039
Probable transporter; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0477/TC:2.A.1.2.19.
  
     0.426
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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