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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2001Probable microbial collagenase; Identified by sequence similarity; putative; ORF located using Blastx. (823 aa)    
Predicted Functional Partners:
cviI
N-acyl homoserine synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG3916.
  
     0.743
CV_0315
Probable peptidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0339.
  
     0.742
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
  
     0.721
CV_2185
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3209.
  
     0.676
rhsA
Nematicidal protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3209.
  
     0.650
CV_2430
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3642.
  
     0.643
CV_2274
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.642
CV_0362
Probable thermolabile hemolysin, lecithin dependent; Identified by sequence similarity; putative; ORF located using Blastx/COG3240.
  
   
 0.621
CV_2443
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.616
CV_0028
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.605
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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