STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2008Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1262. (258 aa)    
Predicted Functional Partners:
CV_2009
Hypothetical protein.
   
 0.982
aniA
Nitrite reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2132; Belongs to the multicopper oxidase family.
 
   
 0.954
norB
Nitric oxide reductase, subunit B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3256/TC:3.D.4.5.1.
 
   
 0.631
macB
Probable ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.452
CV_2944
Probable amidotransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0121.
  
  
 0.432
CV_3943
Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136.
  
    0.410
CV_4397
Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136.
  
    0.410
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.