Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
motB2Chemotaxis motB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.1. (306 aa)    
Predicted Functional Partners:
motA1
Chemotaxis motA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.1.
 0.999
lafT
Chemotaxis lafT protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.1.
 0.997
motA2
Chemotaxis motA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.2.
  
 0.986
flgK1
Flagellar hook-associated protein 1; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1256.
 
  
 0.924
cheZ
Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
  
 0.923
lafU
Chemotaxis lafU protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.1.
  
  
 
0.922
motB1
Chemotaxis motB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.2.
     
0.919
cheV1
Chemotaxis protein CheV; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
  
 0.897
CV_2028
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0500.
 
     0.875
fliF1
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.875
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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