Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_2052Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1917. (141 aa)    
Predicted Functional Partners:
CV_2053
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2828.
       0.498
sir2
Transcriptional regulator; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.466
hutC
Histidine utilization repressor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
    0.441
CV_0555
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
    0.441
CV_1063
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
    0.441
phnF
Transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
    0.441
treR
Transcriptional repressor of the trehalose operon; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
  
    0.441
nadD
Probable nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.428
acnA2
Aconitate hydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1048.
       0.401
CV_2055
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3554.
       0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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