Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2059Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3073. (160 aa)    
Predicted Functional Partners:
mucB
Negative regulator for alginate biosynthesis MucB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3026.
 
 
 0.998
rpoE
RNA polymerase sigma-E factor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.987
CV_0585
Probable RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.932
CV_2973
Probable ecf-family RNA polymerase sigma factor transcription regulator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.932
mucD
Serine protease MucD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0265; Belongs to the peptidase S1C family.
  
 
 0.929
htrA
Periplasmic serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG0265; Belongs to the peptidase S1C family.
  
 
 0.883
CV_0737
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.870
CV_2526
Probable extracytoplasmic sigma factor EcfR; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.870
sspB
Stringent starvation protein B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2969.
    
 
 0.824
CV_4371
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0508.
   
    0.776
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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