STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2087Probable transcriptional regulator, MerR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0789. (135 aa)    
Predicted Functional Partners:
atoB
acetyl-CoA C-acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.792
narX
Transmembrane nitrate/nitrite sensor kinase transcription regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
      
 0.661
narK1
Nitrite extrusion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2223.
   
  
 0.650
CV_3659
Probable transcriptional regulator arsR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1510; Belongs to the GbsR family.
      
 0.646
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.589
CV_3503
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
   
 
 0.561
paaH
3-hydroxybutyryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1250.
       0.534
CV_1153
Probable transcriptional regulator, MerR family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0789.
  
     0.514
dnaJ
Heat shock protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
  
 
 0.501
narK2
Nitrite extrusion protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2223.
   
  
 0.498
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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