STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2116Hypothetical protein. (82 aa)    
Predicted Functional Partners:
CV_2117
Probable bacteriophage baseplate protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
     
 0.847
CV_2118
Probable bacteriophage regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3500.
     
 0.847
CV_2115
Probable bacteriophage tail fiber protein; Identified by sequence similarity; putative; ORF located using Blastx.
     
 0.772
CV_2114
Probable pyocin R2_PP, tail fiber protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
      
 0.646
CV_2150
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/COG1396.
      
 0.646
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.646
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
      
 0.618
CV_2119
Probable bacteriophage tail fibre protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1652.
       0.586
CV_2120
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0840.
       0.586
CV_2121
Probable bacteriophage tail protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0730.
       0.586
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.