STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2185Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3209. (380 aa)    
Predicted Functional Partners:
rhsA
Nematicidal protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3209.
 
     0.961
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.684
CV_2001
Probable microbial collagenase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.676
ssaJ
Type III secretion system apparatus lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
  
    0.526
escC
Type III secretion system EscC protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.3.3.
 
    0.518
CV_1878
Probable ATP-binding component of a transport system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.2.1.
  
    0.517
CV_4319
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1541.
  
     0.479
luxE
Long-chain-fatty-acid--luciferin-component ligase, Acyl-protein synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG1541.
  
     0.478
CV_0423
Probable phage tail protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.464
mgtA
Mg2+-importing ATPase; Identified by sequence similarity; putative; ORF located using Blastx/COG0474/TC:3.A.3.4.1.
   
  
 0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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