Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2225Probable sodium/proton-dependent alanine carrier protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1115/TC:2.A.25.1.2. (364 aa)    
Predicted Functional Partners:
CV_2223
Probable sodium/alanine symporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1115/TC:2.A.25.1.1.
     0.985
CV_2224
Probable transposase; Identified by sequence similarity; putative; ORF located using Blastx/COG2801.
       0.586
nasT
Response regulator NasT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0784.
       0.524
nasF
Nitrate transporter protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0715.
       0.517
CV_2429
Probable chloride channel protein EriC; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0038/TC:1.A.11.4.1.
   
    0.460
CV_3619
Probable voltage-gated chloride channel family protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0038/TC:1.A.11.5.1.
   
    0.460
CV_1536
Hypothetical protein.
   
    0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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