Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nasANitrate/nitrite transporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2223/TC:2.A.1.8.2. (400 aa)    
Predicted Functional Partners:
narG
Respiratory nitrate reductase alpha chain; Identified by sequence similarity; putative; ORF located using Blastx/COG0243; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.983
napA
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0243/TC:5.A.3.2.1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.978
narH
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1140.
 
 
 0.977
narI
Nitrate reductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2181/TC:5.A.3.1.1.
 
 
 0.972
aniA
Nitrite reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2132; Belongs to the multicopper oxidase family.
    
 0.917
CV_2360
Probable Dioxygenase related to 2-nitropropane dioxygenase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2070.
 
  
 0.916
CV_4048
Probable 2-nitropropane dioxygenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2070.
    
 0.902
nasT
Response regulator NasT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0784.
 
  
 0.730
nasF
Nitrate transporter protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0715.
 
  
 0.718
narJ
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2180.
 
  
 0.700
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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