Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
maaMaltose O-acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0110. (173 aa)    
Predicted Functional Partners:
argD
Acetylornithine aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0161; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.916
capH
Capsular polysaccharide synthesis enzyme O-acetyl transferase; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.789
rfbC
dTDP-6-deoxy-D-glucose-3,5 epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.753
CV_2262
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477.
     
 0.730
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      0.699
NifR3
Regulatory gene required to sense and relay the nitrogen status; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
      
 0.646
CV_2257
Hypothetical protein.
       0.603
CV_3179
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2148.
  
  
 0.531
CV_4117
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2148.
  
  
 0.531
CV_4115
Probable polysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1086.
  
  
 0.499
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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