Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2323Probable transcriptional regulatory protein, LuxR family; Identified by sequence similarity; putative; ORF located using Blastx/COG2197. (224 aa)    
Predicted Functional Partners:
CV_2324
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
 
 0.965
CV_1951
Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Blastx/COG0784.
  
 
 0.908
cheR2
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
      0.891
CV_3089
Probable two-component system; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
 
 0.855
CV_0473
Probable sensor histidine kinase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0642.
 
 
 0.822
CV_1580
Probable two-component hybrid sensor-regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2201.
  
 
 0.809
CV_0920
Probable two-component transmembrane sensor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
 
 
 0.788
nadK
Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.773
recN
DNA repair protein recN; May be involved in recombinational repair of damaged DNA.
       0.722
CV_3009
Probable sensor/response regulator hybrid; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
 
 
 0.720
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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