Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2403Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (474 aa)    
Predicted Functional Partners:
fepA
Enterobactin-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.7.1.
    
 
 0.714
CV_3188
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.2.
    
 
 0.714
comA
Competence protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2333.
  
  
 0.685
bglB
Beta-glucosidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2723; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.610
evgS
Sensor protein evgS precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784.
  
  
 0.590
ecpD
Chaperone protein ecpD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3121.
   
  
 0.581
fimD
Outer membrane usher protein precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3188/TC:1.B.11.3.1.
   
  
 0.567
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
  
  
 0.566
CV_2402
Hypothetical protein.
       0.563
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.529
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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