STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2430Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3642. (366 aa)    
Predicted Functional Partners:
rhsA
Nematicidal protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3209.
 
     0.940
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.936
CV_3620
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0278; Belongs to the glutaredoxin family. Monothiol subfamily.
    
 
 0.744
CV_2001
Probable microbial collagenase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.643
CV_1878
Probable ATP-binding component of a transport system; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.2.1.
  
     0.509
CV_4320
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1541.
 
     0.503
CV_4319
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1541.
 
     0.500
escC
Type III secretion system EscC protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.3.3.
  
     0.498
luxE
Long-chain-fatty-acid--luciferin-component ligase, Acyl-protein synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG1541.
 
     0.483
CV_2431
Hypothetical protein.
       0.443
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.