STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2467Probable membrane lipoprotein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1744. (336 aa)    
Predicted Functional Partners:
mglA
Sugar ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1129.
 
 0.991
CV_2350
Probable sugar ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1079/TC:3.A.1.2.2; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.980
CV_2349
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1079; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.976
CV_2347
Probable membrane lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/COG1744.
  
  
 
0.901
rbsA
D-ribose transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
 0.567
CV_2468
Hypothetical protein.
       0.498
deoA
Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
 
   
 0.432
CV_2465
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1695.
       0.407
mxcB
Iron-chelator utilization protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2375.
       0.407
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.407
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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