STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2476Probable signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx. (332 aa)    
Predicted Functional Partners:
recJ
Exodeoxyribonuclease VII; Identified by sequence similarity; putative; ORF located using Blastx/COG0608.
       0.803
CV_2093
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
  
     0.725
CV_4133
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.700
bioC
Biotin synthesis protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
     0.699
CV_3788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.692
CV_0994
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.649
CV_3397
Probable stearoyl-CoA 9-desaturase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1398.
  
     0.529
CV_2033
Probable NADH-ubiquinone oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0702.
  
     0.512
CV_3904
Conserved hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.511
CV_2477
Probable Peptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0739.
       0.497
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.