STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2489Probable glucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2303. (516 aa)    
Predicted Functional Partners:
CV_2490
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0542.
 
     0.918
CV_3911
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
    
 0.889
aniA
Nitrite reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2132; Belongs to the multicopper oxidase family.
 
 
 
 0.853
CV_3056
Probable cytochrome c precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2010.
  
 
 0.819
CV_2491
Probable aldehyde dehydrogenase (NAD); Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1012; Belongs to the aldehyde dehydrogenase family.
 
  
 0.747
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.730
CV_1171
Probable cytochrome-c oxidase, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.687
CV_2219
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
   
 
 0.687
CV_2863
Hypothetical protein.
   
 
 0.687
CV_0523
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.624
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.