STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2489Probable glucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2303. (516 aa)    
Predicted Functional Partners:
CV_2490
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0542.
 
     0.917
CV_3056
Probable cytochrome c precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG2010.
  
 
 0.794
CV_2491
Probable aldehyde dehydrogenase (NAD); Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1012; Belongs to the aldehyde dehydrogenase family.
 
  
 0.746
CV_3911
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
    
 0.723
CV_0523
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.624
CV_2384
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1309.
  
  
 0.623
CV_1041
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.603
CV_1077
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1309.
  
  
 0.571
estX
Esterase/lipase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0596.
 
   
 0.494
spaT
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0457.
    
 0.487
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.