STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2490Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0542. (171 aa)    
Predicted Functional Partners:
CV_2489
Probable glucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2303.
 
     0.918
CV_2491
Probable aldehyde dehydrogenase (NAD); Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1012; Belongs to the aldehyde dehydrogenase family.
 
   
 0.850
CV_0523
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.731
CV_2384
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1309.
  
     0.702
estX
Esterase/lipase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0596.
  
     0.603
CV_1077
Probable transcriptional regulator, TetR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1309.
  
     0.596
CV_1041
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.553
CV_2492
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2207.
       0.474
lipH
Lipase modulator protein; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.462
CV_0488
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/TC:1.A.4.1.1.
  
     0.450
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.