STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqiAParaquat-inducible protein A; Identified by sequence similarity; putative; ORF located using Blastx/COG2995. (206 aa)    
Predicted Functional Partners:
CV_2549
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2995.
    
0.984
pqiB
Paraquat-inducible protein B; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3008.
  
 0.975
CV_2546
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
  
 0.965
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.823
CV_2550
Probable mitomycin resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0177.
       0.693
pstA
ABC-type phosphate transport system, permease component; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0581/TC:3.A.1.7.1.
      
 0.550
CV_2551
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0730.
       0.495
narK1
Nitrite extrusion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2223.
       0.478
narK2
Nitrite extrusion protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2223.
       0.448
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.