STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2584Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207. (262 aa)    
Predicted Functional Partners:
ssaJ
Type III secretion system apparatus lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
 
  
 0.785
ssaG
Secretion system apparatus; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
       0.766
CV_2586
Probable type III secretion apparatus; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
       0.764
CV_2654
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
   0.732
CV_2587
Hypothetical protein.
       0.696
CV_2589
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.696
CV_2313
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.694
rhaR
L-rhamnose operon transcriptional activator rhaR; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.623
CV_2101
Probable transcriptional regulator, AraC family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0693.
  
   0.606
araC
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2207.
  
     0.570
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.