Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpbDCarbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397. (386 aa)    
Predicted Functional Partners:
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.860
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
 
   
 0.785
chiA
Endochitinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
  
 0.747
CV_2935
Probable chitinase A; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx; Belongs to the glycosyl hydrolase 18 family.
  
0.670
CV_2591
Probable cytochrome b561; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3038.
       0.661
secB
Protein-export protein; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
      
 0.646
lasA
LasA protease precursor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0739.
  
  
 0.636
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
  
  
 0.624
CV_0236
Hypothetical protein.
  
     0.623
CV_3489
Probable chitin-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3397.
  
     0.603
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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