Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
escCType III secretion system EscC protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.3.3. (495 aa)    
Predicted Functional Partners:
escT
Type III secretion system EscT protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1.
 
 
 0.978
escS
Type III secretion apparatus protein EscS; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.1.
 
 
 0.971
escU
Type III secretion system EscU protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.1.
 
  
 0.969
escV
Type III secretion system EscV protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1298/TC:3.A.6.1.1.
 
 
 0.958
spaP
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1338/TC:3.A.6.1.1.
 
 
 0.955
ssaJ
Type III secretion system apparatus lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
 
 
 0.953
prgK
Cell invasion protein; Lipoprotein, may link inner and outer membranes; identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
 
 
 0.952
escR
Type III secretion system EscR protein; Identified by sequence similarity; putative; ORF located using Blastx/COG4790.
 
 
 0.946
spaQ
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.1.
 
 
 0.939
spaR
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1.
 
 
 0.923
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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