Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
invFAraC-family regulatory protein/invasion protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2207. (197 aa)    
Predicted Functional Partners:
invG
Invasion protein - outer membrane; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.3.2.
 
   
 0.929
invA
Invasion protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1298/TC:3.A.6.1.1.
 
   
 0.869
invE
Invasion protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
  
 0.775
spaS
Secretory protein / flagellar biosynthetic protein flhB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.1.
 
   
 0.774
spaQ
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.1.
 
     0.738
spaR
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1.
 
     0.729
escC
Type III secretion system EscC protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.3.3.
  
   
 0.718
hilA
Invasion genes transcription activator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
  
   
 0.705
invC
Surface presentation of antigens, secretory proteins; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157.
 
     0.689
prgK
Cell invasion protein; Lipoprotein, may link inner and outer membranes; identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.1.
  
  
 0.683
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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