STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2642Probable membrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0670/TC:9.B.24.2.1; Belongs to the BI1 family. (229 aa)    
Predicted Functional Partners:
iacP
Acyl carrier protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0236.
     
 0.684
CV_2417
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
      
 0.682
prgH
Pathogenicity 1 island effector protein; Identified by sequence similarity; putative; ORF located using Blastx.
      
 0.681
CV_2516
Probable colicin V production protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1286.
  
    0.595
sdhD
Succinate dehydrogenase, hydrophobic subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2142.
  
     0.542
hemX
uroporphyrin-III C-methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2959.
  
     0.529
htpX1
Heat shock protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0501; Belongs to the peptidase M48B family.
  
  
 0.529
htpX2
Heat shock protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0501; Belongs to the peptidase M48B family.
  
  
 0.529
CV_4261
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.504
CV_1255
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0500.
 
     0.450
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.