STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2707Probable short chain dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1028. (252 aa)    
Predicted Functional Partners:
CV_0106
Probable O-methyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0500.
 
  
 
 0.820
CV_2706
Probable transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0583; Belongs to the LysR transcriptional regulatory family.
 
     0.600
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
 
 
 0.586
entB
Isochorismatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1535.
  
  
 0.554
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequence similarity; putative; ORF located using Blastx/COG0331.
 
 0.553
CV_2708
Probable transcriptional regulator, Crp/Fnr family; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0664.
   
 0.533
fadB
3-hydroxyacyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1024.
  
 0.513
CV_3819
Probable maoC-like dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2030.
 
 0.481
CV_3911
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
    
 0.452
ubiB
NAD(P)H-flavin reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0543/TC:3.D.5.1.1.
  
 
 0.451
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.