STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usgAspartate-semialdehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0136; Belongs to the aspartate-semialdehyde dehydrogenase family. (336 aa)    
Predicted Functional Partners:
lysC
Aspartate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0527; Belongs to the aspartokinase family.
 
 
 0.994
metL
Homoserine dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0460.
  
 0.978
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.975
dapA-2
Probable dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.973
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
    
 
0.947
CV_2804
Probable diaminobutyrate-pyruvate transaminase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.912
CV_2798
Probable macrolide efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.21.1.
     
  0.900
argH
Argininosuccinate lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0165.
  
  
 0.738
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
  
  
 0.682
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.652
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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