STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2786Probable MFS metabolite transporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.27.1. (386 aa)    
Predicted Functional Partners:
CV_2787
Probable ribosome-associated heat shock protein Hsp15; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1188.
       0.613
CV_2788
Probable isomerase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0179.
       0.606
CV_3225
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3496.
  
  
 0.572
CV_0523
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
 
 0.561
CV_3444
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1366.
 
     0.447
CV_1394
Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0637.
  
    0.426
CV_1397
Probable beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0637.
  
    0.426
CV_2924
Probable hydrolase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0637.
  
    0.426
xylB
Xylulokinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1070; Belongs to the FGGY kinase family.
  
  
 0.413
fruA
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1445/TC:4.A.2.1.1.
   
  
 0.406
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.