STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampHPenicillin-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1680. (438 aa)    
Predicted Functional Partners:
CV_3317
Probable ABC transporter protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.4.
  
     0.653
mccF
Microcin C7 self-immunity protein mccF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1619.
 
  
  0.618
mtgA
Peptidoglycan glycosyltransferase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
   
 
 0.560
CV_0229
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1619.
    
  0.543
CV_3472
Hypothetical protein.
    
 0.533
CV_2807
Hypothetical protein.
       0.532
cdh
CDPdiacylglycerol diphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/COG2134.
  
     0.508
fes
Enterochelin esterase; Identified by sequence similarity; putative; ORF located using Blastx/COG2382.
 
   
 0.462
CV_0113
Probable aspartate/glutamate racemace protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1794.
 
  
 0.451
entF
Enterobactin synthetase component F; Identified by sequence similarity; putative; ORF located using Blastx/COG1020.
  
  
 0.406
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.