Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2822Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0683. (382 aa)    
Predicted Functional Partners:
livM
Leucine/isoleucine/valine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.995
livH
Leucine/isoleucine/valine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
livG
Leucine/isoleucine/valine transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0411.
 
 
 0.993
livF
Leucine/isoleucine/valine transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0410.
 
 
 0.989
CV_0405
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0683/TC:3.A.1.4.1.
  
  
 
0.904
CV_1539
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0683.
  
  
 
0.904
CV_2481
Probable amino acid ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0683.
  
  
 
0.903
nasT
Response regulator NasT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0784.
  
 
 0.708
CV_2824
Probable ketoglutarate semialdehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG1012.
     
 0.529
dadA1
D-amino-acid dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0665.
       0.527
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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