STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2873Probable hemolysin activator protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2831/TC:1.B.20.1.1. (562 aa)    
Predicted Functional Partners:
CV_2872
Probable hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx/COG3210.
 
 
 0.942
CV_2871
Probable hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx/COG3210.
 
 
 0.914
CV_2869
Probable hemagglutinin-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3210.
 
 
 0.858
CV_1918
Probable hemolysin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3210/TC:1.B.12.1.1.
 
 
 0.856
ecpD
Chaperone protein ecpD precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3121.
  
  
 0.811
fimD
Outer membrane usher protein precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3188/TC:1.B.11.3.1.
   
  
 0.807
CV_0837
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.1.1.
 
 
 0.772
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
  
  
 0.715
shlB
Hemolysin activator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2831/TC:1.B.20.1.1.
  
  
 
0.664
CV_1468
Probable activation/secretion signal peptide protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2831.
  
  
 
0.647
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.