Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (626 aa)    
Predicted Functional Partners:
CV_3258
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2957; Belongs to the agmatine deiminase family.
 
  
 0.949
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
  
 
 0.940
adi
Arginine decarboxylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1982.
     
 0.916
aruF
Arginine N-succinyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3138.
     
  0.900
astA
Arginine N-succinyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3138.
     
  0.900
argH
Argininosuccinate lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0165.
     
 0.848
arcA
Arginine deiminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2235.
    
 0.839
speE
Conserved hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.685
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequence similarity; putative; ORF located using Blastx/COG0331.
   
    0.477
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.457
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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