STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2895Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1940. (403 aa)    
Predicted Functional Partners:
nagE
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.2.
  
 
 0.977
ptsG
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.1.
  
 
 0.977
treB
protein-N p-phosphohistidine-sugar phosphotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1264/TC:4.A.1.2.4.
  
 
 0.977
CV_2902
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3228; Belongs to the MtfA family.
    
 
 0.761
CV_2896
Probable N-acetylglucosamine kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2971.
 
   
 0.704
CV_2894
Probable endoglucanase-related protein; Identified by sequence similarity; putative; ORF located using Blastx.
     
 0.671
CV_2897
Probable sugar ABC transporter periplasmic sugar-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
  
  
 0.605
xylB
Xylulokinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1070; Belongs to the FGGY kinase family.
 
  
 0.601
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.575
CV_2825
Probable dihydroxydipicolinate synthase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0329; Belongs to the DapA family.
 
  
 0.567
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.