STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2896Probable N-acetylglucosamine kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2971. (297 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1820.
 
  
 0.975
CV_0557
Probable aminotransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2222.
 
  
 0.947
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.935
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
   
 
 0.918
CV_2897
Probable sugar ABC transporter periplasmic sugar-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3.
 
    0.842
CV_0555
Probable transcriptional regulator, GntR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2188.
     0.785
CV_2895
Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1940.
 
   
 0.704
CV_2894
Probable endoglucanase-related protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.672
CV_2898
Probable sugar ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1175.
       0.588
CV_2899
Probable ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.4.
       0.587
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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