Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CV_2902Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3228; Belongs to the MtfA family. (276 aa)    
Predicted Functional Partners:
CV_2895
Probable transcriptional regulator protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1940.
    
 
 0.747
CV_2903
Probable Na/H+ antiporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0025/TC:2.A.37.2.3.
 
     0.657
CV_2904
Conserved hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
     0.643
ligT
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.553
dedA
DedA protein family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0586.
  
  
 0.551
nudC
Probable NAD diphosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2816.
       0.501
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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