Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmsRHaemin storage system, HmsR protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1215/TC:9.B.32.1.3. (411 aa)    
Predicted Functional Partners:
CV_2940
Hypothetical protein.
  
 0.987
hmsF
Hemin storage signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0726.
 
  
 0.975
hmsH
Hemin-binding outer membrane transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
  
 
 0.948
CV_2736
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG3325.
      0.908
CV_4277
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0726.
 
  
 0.835
CV_3902
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
  
 
 0.807
bcsB
Cellulose synthase, subunit B; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.751
spaT
Surface presentation of antigens; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0457.
  
 
 0.742
bscC
Cellulose synthase, subunit C; Identified by sequence similarity; putative; ORF located using Blastx/COG0457.
  
 
 0.742
CV_2673
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
 
 0.709
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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