Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2945Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2905. (601 aa)    
Predicted Functional Partners:
CV_2946
Probable DNA polymerase III; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0847.
 
    0.989
CV_3280
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3162.
 
  
 0.930
CV_3281
Probable sodium:solute symporter; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0591/TC:2.A.21.7.1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.918
phaJ
Phenylacetic acid permease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0591/TC:2.A.21.7.1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.915
CV_2944
Probable amidotransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0121.
       0.596
CV_3710
Conserved hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.
  
  
 0.547
CV_3328
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1778.
  
  
 0.467
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
     
 0.467
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.460
CV_2404
Probable KrfA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0419.
  
     0.453
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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