Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_2968Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (327 aa)    
Predicted Functional Partners:
CV_2717
Probable extracellular serine protease; Identified by sequence similarity; putative; ORF located using Blastx/COG1404; Belongs to the peptidase S8 family.
  
 
 0.867
CV_0494
Probable outer membrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.3.1.
    
   0.687
CV_1325
Probable thiol-disulfide isomerase and thioredoxin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0526.
    
   0.684
CV_2394
Probable cell division ftsk transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.666
ftsK
Cell division ftsk transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2.
    
 
 0.666
CV_1757
Hypothetical protein.
  
     0.589
CV_1155
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.573
CV_2967
Probable ubiquinone biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0661.
       0.539
CV_3444
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1366.
  
     0.501
prc
Carboxy-terminal processing protease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0793; Belongs to the peptidase S41A family.
  
 
 0.490
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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